Oxepine Synthesis Essay

Abstract

The synthesis of allocolchicine analogues is of importance as these compounds have been found to possess promising anticancer activity by affecting tubulin polymerization. In this paper, the synthesis of 28 novel substituted 6-oxa-allocolchicinoids is reported. The key steps involved in the synthesis were a Suzuki–Miyaura coupling reaction, followed by an acid-catalyzed intramolecular transacetalization to afford the desired 5-alkoxy-5,7-dihydrodibenzo[c,e]oxepines. In addition, when thiophenol and phenol were used in the transacetalization step, the 5-(phenylsulfanyl)-5,7-dihydrodibenzo[c,e]oxepine and 4-(5,7-dihydrodibenzo[c,e]oxepin-5-yl)phenol skeletons were obtained, respectively. The cytotoxicity of the synthetic compounds was unfortunately not impressive; however, one of the compounds was shown to sensitize vincristine-resistant leukemia and lymphoma cells to vincristine, a result vindicating further synthetic studies.

Abstract

Oceans have shown to be a remarkable source of natural products. The biological properties of many of these compounds have helped to produce great advances in medicinal chemistry. Within them, marine natural products containing an oxepanyl ring are present in a great variety of algae, sponges, fungus and corals and show very important biological activities, many of them possessing remarkable cytotoxic properties against a wide range of cancer cell lines. Their rich chemical structures have attracted the attention of many researchers who have reported interesting synthetic approaches to these targets. This review covers the most prominent examples of these types of compounds, focusing the discussion on the isolation, structure determination, medicinal properties and total synthesis of these products.

Keywords: marine drugs, oxepanes, total synthesis, biological activity

1. Introduction

More than 70% of Earth surface is covered by water, 96.5% of which is found in the oceans. This means that the planet’s largest habitat is the ocean, which is the ecosystem where the major part of animals and plants of Earth lives. This includes microscopic algae, marine plants with roots, sponges, corals and all types of fishes, within others. These marine organisms are a great source of natural products with important biological activities.

The continuous search for compounds with pharmacological properties is one of the main aims of scientists. Natural products have always provided a great contribution to medicine since the first discovery of drugs with positive impact in human health. For thousands of years the common sources of natural products with potential biological activities have been microorganisms and land plants. The search for natural products in the sea is much recent, since a parallel development of the appropriate technology was needed. However, since the 70’s the number of isolated marine natural products with outstanding biological properties has grown enormously [1].

A group of marine natural products that attract special interest is polyfunctionalized cyclic ethers. Within them, natural products containing an oxepanyl moiety have been frequently found in sponges, corals, or different marine fungus, within others. Their interesting biological properties include anticancer, antibacterial or antifungal activities. From a structural point of view, many of them are terpenes presenting a great diversity of rings and chains bonded to the oxepanyl ring.

Their challenging structure, together with their promising medicinal properties, has prompted many researchers to try to develop synthetic methodologies to access this class of marine drugs.

In this review, we try to cover marine drugs that contain a single oxepanyl ring in their structure. However, the coverage will not be comprehensive, since we intend to provide a general overview of the interesting biological, structural and synthetic possibilities of this class of metabolites. Within others, we have omitted the family of lauroxanes, since it has already been reviewed by Fujiwara [2]. We also omitted classical examples of marine polyether biotoxins, such as brevetoxins, ciguatoxins, gambierol, etc., which have been addressed by Nicolau [3]. Some of them, along with abudinol B, brevenal, armatol A, enshuol and others, have been recently reviewed by Jamison [4]. Toxicols, adociasulfates and the latest example of halicloic acids A and B are also interesting substances and appear in a recent review [5]. Of course, we could mention many other families and examples of marine natural products that bear the oxepane moiety (spiroxins, phomactins, clavulazols, etc.) but it is out of the scope of our work. On the other hand, some isolated examples of the compounds described here are also present in other reviews devoted to marine triterpenes [6] or marine natural products [7].

This review is roughly organized in five sections, according to the structure and biogenetic origin of the compounds. For some of the families, only structure determination, isolation and biological activity have been reported. For the rest of the products some of the most relevant synthetic approaches reported till date are described.

2. Halogenated Sesquiterpenoids: Aplysistatin and Palisadins

Aplysistatin was first isolated from the South Pacific Ocean sea hare Aplysia angasi in 1977 [8]. In his paper, Pettit pointed out that this compound could be derived from its diet, since it is known that sea hares usually graze algae and other similar metabolites had already been isolated from algae [9,10,11,12]. This hypothesis was confirmed in 1980, when aplysistatin was collected from the alga Laurencia cf. palisada Yamada in 1980 [13]. Since then, it has been identified in many other Laurencia species, namely Laurencia filiformis [14], Laurencia implicata [15], Laurencia flexilis [16], Laurencia karlae [17], Laurencia luzonensis [18], Laurencia saitoi [19], Laurencia similis [20] and Laurencia snackeyi [21].

This sesquiterpene bears a unique structure, as shown in Figure 1. Its absolute configuration was established by X-ray diffraction [8,22], showing a trans-anti stereochemistry for the fused rings.

As for its biological activity, it was reported to inhibit progression of murine lymphocytic leukemia P-388 (T/C 175 at 400 mg/kg) [8] and a broad range of other cultured tumor cells. It also showed antimalarial activity [23], anti-inflammatory activity and ability to suppress the expressions of iNOS and COX-2 enzymes [24].

In 1980, Fenical reported the isolation of palisadin A, palisadin B and other three related compounds from Laurencia cf. palisada [13]. Later, palisadin C [16], along with other substituted palisadins, has been isolated (structures of this family are shown in Figure 2). They have a similar structure to aplysistatin, although lacking the lactone ring, and are also present in many algae of the Laurencia species.

Figure 2

Main structures in the palisadin family.

5β-hydroxipalisadin B (Figure 3) showed effective anti-inflammatory properties, reducing stress-induced reactive oxygen species formation, and inhibiting the lipopolysaccharide-induced NO production in zebrafish embryos [25].

Figure 3

Structure of 5β-hydroxypalisadin B.

The unusual, but not exceptionally complex, structure of these compounds has attracted the attention of synthetic chemists. In 1979, just two years after its isolation, Hoye and coworkers reported the first total synthesis of aplysistatin [26]. Diene 7 was obtained in two steps from the p-toluenesulfonate ester of homogeraniol 6, by alkylation with the enolate anion of 2-phenyltioacetate and subsequent aldol condensation. An additional key Hg(TFA)2/bromine-mediated cyclization provided a mixture of diastereomeric oxepins 8, which in two steps (oxidative elimination and final debenzylation-lactonization) provided aplysistatin (1a) and 12-epi-aplysistatin (1b) (see Scheme 1). In the next few years some other total syntheses of 1 were reported which did not imply any improvements in either yields or stereoselectivities [27,28,29,30,31,32].

Regarding palisadins, Yamashita’s group performed the first total synthesis of (+)-palisadin A and (+)-hydroxypalisadin B [33], also relying on a Hg(TFA)2/bromine-mediated cyclization as the key step. In 2004 Couladouros’ group published a general approach to trans-fused oxepene-cyclogeranyl systems, and applied it to the synthesis of aplysistatin, palisadins A and B and 12-hydroxypalisadin B [34]. Their strategy followed an alternative route based on the formation of the oxepanyl derivative by addition of a tertiary alcohol to a 1,2-disubstituted epoxide and subsequent ring closing metathesis Scheme 2.

This oxepene intermediate provided easy access to the desired natural products in three or four additional steps, as depicted in Scheme 3.

3. Marine Diterpenes: Oxepin Lobatrienol

Lobanes are a family of diterpenes from genus Lobophytum, also known as “devil’s hand corals”. Their habitat covers the shallow waters of Indo-Pacific coasts [35,36], although these compounds have been also isolated from Eunicea fusca [37,38], Sinularia [39,40,41] and Sarcophyton [42] species. Their structure is based on the main scaffold of β-elemene and one of the members of this family, the one called oxepin lobatrienol, possess an oxepane-like moiety (see Figure 4). In such molecule, an oxepanol moiety has substituted a prop-1-en-2-yl unit in C4 [43]. Despite their remarkable bioactivity, few efforts have been devoted to the synthesis of this kind of compounds [44,45,46,47].

Figure 4

Chemical structures of β-elemene (19), common scaffold for all lobanes; and of oxepin lobatrienol (20) with oxepine structure highlighted.

All members of lobane family are lethal against Cladosporium cucumerinum, a pathogen fungus responsible for scab disease that affects cucumbers, and against genus Artemia species (commonly known as brine shrimps). Apparently, the nature of the isoprenyl fragment attached to the basic structure of β-elemene determines which of the two properties predominates. It seems that when the activity against the fungus is increased, the activity against brine shrimps is decreased, and vice versa. These findings suggest a non-generic toxicity and a specific mode of action is yet to be discovered. Interestingly, oxepin lobatrienol possess intermediate activity and it performs well in both tasks, demonstrating, once more, the importance of oxepane-like structures.

4. Marine Triterpenes

This huge group consists of a set of triterpenes bearing oxepane moieties [48,49]. It is believed that their biosynthesis comes from the metabolism of very simple squalene building blocks. They have been named according to their origin, either from the species or the place where they were obtained. Bearing in mind the complexity of the classification, we decided to divide it into 5 categories.

4.1. Sipholenols Family

The first compound of this group (sipholenol A) was isolated by Shmueli, Kashman and coworkers [50] from the colonial tube-sponge Siphonochalina siphonella, a species whose habitat is the Red Sea. Just two years later, up to nine molecules were already known [51,52]. Less attention was paid in the 90s (mainly due to the discovery of similar families such as sodwanones) until the beginning of the 21st century, when interest for these species was renewed. Nowadays, the number of compounds belonging to sipholenols has increased up to thirty [53,54,55].

From the structural point of view, the molecules contain a hydroazulene fragment (with variable insaturations) linked through an ethylene bridge to a trans-decahydrobenzoxepin, as seen in Figure 5. It must be noted that this is the most common scaffold, but not present in all of them. There are some differences in the last set of discovered molecules, e.g., the rearrangement of azulene fragment or the substitution of an oxepane by a tetrahydropyran.

Figure 5

Molecular structures of sipholenol A and the two main scaffolds in the sipholenol family.

These molecules have shown good anti-cancer properties [56]. In more detail, they are able to reverse P-glycoprotein-mediated multi drug resistance in cancer cells by inhibiting the drug efflux from this protein, along with other effects [57,58,59,60]. Currently, their antiproliferative effects towards human hepatic and colorectal cancer cells are being studied [61].

Moreover, this family can be used as antifouling agent owing to its ability to disrupt settlement of barnacle larvae.

4.2. Neviotanes and Dahabanes

Along with sipholenols, Kashman and collaborators also reported the isolation of Neviotines A and B with Dahabinone A from the same sponge Siphonochalina siphonella. Such names have their origin in the place from which these species were extracted: Nevi’ot (Israel) and Dahlak islands (Erithrea), respectively [53,62]. The structure of the latter compound is very similar to that from sipholenols family, bearing a second oxepane unit fused to a cyclohexane instead of the azulene moiety. Unlike sipholenols and dahabanes, neviotanes possess a pentacyclic core in which there are two groups connecting though a single bond (Figure 6).

Figure 6

Neviotanes and Dahabinone A discovered by Kashman during their studies with Siphonochalina siphonella.

In addition, new compounds of this family have been reported recently [63].

4.3. Sodwanones

This class of compounds was first isolated from the Indo-Pacific fan sponge Axinella weltneri, collected during the summer of 1992 in Sodwana Bay, South Africa [64,65]. Since then, they have been found in other species, namely Ptilocaulis spiculifer [66], and Axinella cf. bidderi [67], and so far they form a family of more than 20 compounds [68,69,70,71,72]. They are examples of the rare marine triterpenes, which have a common structure showing an oxepane-cycloalkane moiety. As far as we know, no attempts of synthesis of any of the sodwanones have been done.

Many of the sodwanones have shown interesting properties. Sodwanone A (Figure 7) was active against several cell lines, such as a lung carcinoma cell line [67], three esophageal cancer cell lines [73], an ovarian cancer one [71] and some others. Sodwanones G, H and I were found to be toxic against several cancer cell lines [69]. Sodwanone M was reported to be cytotoxic to P-388 murine leukemia cells [68]. Sodwanone S was moderately active against several lines [71] and some other members of the sodwanone family inhibited hypoxia-induced HIF-1 activation in breast and prostate tumor cells [72].

4.4. Shaagrockols

In parallel to the discoveries of sodwanones, two new compounds were reported by Kashman’s group in 1992 called Shaagrockols B and C from the Red Sea sponge Toxiclona toxius [74,75]. Their name comes from the place where the sponge was collected: Shaag rock, in the entrance to the Gulf of Suez. Structurally, they are very closely related to sodwanones and the main difference arises from the additional tetrahydroquinone fragment that bears sulfonate groups [76,77], as depicted in Figure 8. They have shown antifungal activity against Candida albicans and inhibition of Human Immunodeficiency Virus Type 1 Reverse Transcriptase (HIV-1 RT).

Figure 8

Shaagrockols isolated by Kashman’s group.

In recent years, new members of this family have appeared [78] and some synthetic approaches have been carried out [79].

4.5. Raspacionins

This family was firstly discovered by Puliti, Madaio and collaborators between 1991 and 1992. Compounds were isolated from red encrusting sponge Raspaciona aculeata [80,81,82,83]. From the structural point of view, these quasi-symmetrical molecules resemble dahabinone as they contain two oxepane subunits (Figure 9). After such initial discoveries, other minor secondary metabolites were found [84,85].

Figure 9

Structures of early raspacionins reported by Puliti and Madaio.

5. Meroterpenoids: Austalides

This family consists of a 28-membered group of molecules whose origin comes from Penicillium and Aspergillus marine-derived genera. First discovered in 1981 by Vleggaar and coworkers and new compounds are nowadays being reported [86,87,88,89,90,91,92]. They are meroterpenoids possessing 4 to 6 carbo and heterocycles, from which 12 of them bear an oxepane-like structure. Their basic structure is based on a pentacyclic 5/6/6/6/7 system, as shown in Figure 10. It is known that their biosynthesis has its origin in a farnesyl phthalide derivative, which, upon cyclization and oxidative modifications, furnishes this family [93,94,95]. Many beneficial effects have been found, such as anticancer, antibacterial, antiviral and antifouling properties; most of them due to specific inhibition of crucial target proteins (α-glucosidase, AP-1 transcription factor, endo-1,3-β-d-glucanase, etc.).

Figure 10

The whole family of oxepane-containing austalides.

The only attempt regarding the total synthesis of a member of this family was reported by Paquette and coworkers in 1994 [96,97]. The selected molecule was (−)-Austalide B. They envisaged a retrosynthetic analysis by splitting the preparation into two sections. The so-called western sector was considered the most challenging difficulty. To access compound 38, lactone 39 seemed to be the best precursor, which could derive from a ring expansion of a tetrahydrofuran (40) through a Baeyer-Villiger oxidation. Such molecule could be obtained from very simple diketone 41 after a Robinson annulation and subsequent ring expansion. On the other hand, the phthalide moiety (eastern sector) could be easily connected through a sequence of conventional proceedings to dihydropyran (38) (Scheme 4).

Starting by readily available 41, the saturated ketone was regioselectively protected and subjected to metal reduction in the presence of methyl iodide to give 42. Robinson annulation did not yield the expected cyclization, so the reaction with 4-chloro-2-butanone under acidic conditions was used instead to obtain 43. This compound was dimethylated to furnish 44 and complete the first stage of the western section synthesis (Scheme 5).

Then, compound 44 was oxidized with osmium tetroxide to give a diol whose secondary alcohol was selectively protected as SEM ether 45. Under Baeyer-Villiger conditions only the cyclohexanone moiety underwent the homologation process resulting in 46. The second Bayer-Villiger oxidation could be accomplished upon formation of the corresponding ortho lactone 47, thus obtaining the expected complete western section 48. The process is summarized in Scheme 6.

The synthesis of the eastern section (Scheme 7) turned out to be much harder than initially expected. Finally, after two unsuccessfully attempts, Paquette and coworkers were able to achieve desired Austalide B and the procedure is described as follows. Lactone 48 was subjected to C-alkylation (with cyanoformate) and subsequent O-triflation to give 49. This triflate was coupled with previously prepared stannane 50 under standard Stille conditions to obtain compound 51. Then, intramolecular cyclization and further benzannulation followed by methylation gave rise to 52, whose main scaffold was very close to the natural desired product. Finally, deprotection of SEM group in the western section and inversion at C6 in a 3-step sequence ultimately yielded (−)-Austalide B (28).

6. Alkaloids

6.1. Bromotyrosine Alkaloids: Psammaplysins and Ceratinamides

In 1983, Kashman and coworkers reported the isolation of two new compounds from sponge Psammaplysilla purpurea [98]. They showed antibiotic properties, being active against gram-positive bacteria and E. coli. Initially, their structures were wrongly assigned as spirocyclohexadienyloxazoline derivatives. Two years later, Scheuer and Clardy elucidated the correct structure (Figure 11), based on a deeper study of the NMR spectra and single-crystal X-ray diffraction [99]. The absolute configuration for psammaplysin A was assigned as (6S*,7S*), but recently it has been corrected to (6R,7R) by Garson and Kurtán [100].

Figure 11

Kashman’s assigned structure of psammaplysins A and B (wrong), and later correction by Scheuer, Clardy and coworkers.

In the nineties, some other members of the family were reported. Psammaplysin C was isolated from Psammaplysilla purpurea by Ireland and coworkers in 1992 [101]. It has identical structure to psammaplysin B, except for the amine substitution. Later on, Scheuer and coworkers reported the new psammaplysins D and E from an unknown species of Aplysinella sponge, collected at Pingelap Atoll, Micronesia [102]. The former has an amide group instead of the terminal amine and the latter has an unprecedented cyclopentenedione ring. In 1996, Fusetani’s group isolated ceratinamides A and B, named after the sponge they were isolated from, Pseudoceratina purpurea [103]. These new compounds, along with Psammaplysins A and E showed antifouling activity against Balanus amphitrite. Finally, psammaplysin F was reported by Schmitz and coworkers, from a sponge believed to be from the Aplisynella genus [104]. The structures of these compounds are shown in Figure 12.

Figure 12

Psammaplysins A–F and Ceratinamides A and B.

In the 2000s no new members of this family were reported. Bewley and coworkers reported that psammaplysins A and B inhibit mycothiol-S-conjugate amidase from Mycobacterium tuberculosis and Mycobacterium smegmatis, also inhibiting growth of the latter [105,106].

In 2010, Quinn and coworkers isolated psammaplysin G from an Australian sponge of Hyatella species [107]. It is the first example of this family that bears a terminal N-methylurea moiety. Both psammaplysin F and G showed antimalarial activity. Psammaplysin G was very active against a chloroquine-resistant (Dd2) strain of Plasmodium falciparum at 40 µM but was not cytotoxic at all to HEK293 (a human embryonic kidney cell line). Psammaplysin F obtained better values (1.4 and 0.87 µM) against Dd2 and 3D7 (chloroquine-sensitive) strains, respectively. In 2011, the same group reported the isolation of psammaplysin H, being also active against P. falciparum, and quite selective (>97-fold) [108]. Ramsey and McAlpine reported antibiotic activity for psammaplysins F and H against Gram-positive bacteria. Psammaplysin F produced an unequal chromosome partitioning between daughter cells, placing it as a possible new lead antibiotic.

In the past few years, many other compounds have appeared. In 2012, Wright reported psammaplysins I and J from a Suberea species sponge [109], but did not assess their biological activity. In the same year, Garson found 21 new derivatives from the sponge Aplysinella strongylata [110]. Five of them had different chains attached to C-16, and the rest had terminal fatty acid chains. 19-Hydroxypsammaplysin E inhibited growth of P. falciparum (IC50 = 6.4 µM). Another four compounds of this kind were isolated by Lee and coworkers from a sponge of the genus Suberea in 2013 [111]. Most of them had a significant activity against several cancer cell lines. Lee also assessed some moloka’iamines and ceratinamides from the same sponge, and they exhibited no activity up to 70 µM, thus concluding that the spirooxepinisoxazoline moiety is crucial for their anticancer activity. Comparison of the structures can be seen in Figure 13.

Figure 13

Basic structures present in moloka’iamines, ceratinamines and psammaplysins. The spirooxepinisoxazoline moiety present in the latter (red square) could be the key for their anticancer properties.

To the best of our knowledge, no total synthesis of any of the compounds of this family has been reported.

6.2. Guanidinium Alkaloids

The family of guanidinium alkaloids containing oxepane rings is diverse since it contains over 15 members. Fortunately, they share some structural similarities [112]. A triazaperhydroacenaphthalene skeleton directly connected to an oxepane and a tetrahydropyran, giving rise to the so-called pentacyclic “vessel unit”, is common in all molecules. Then, a very long chain is linked to this scaffold containing a hydrocarbon fatty acid functionalized as amide with a spermidine moiety furnishing the “anchor unit”. The reason why these two parts are called like this are due to the likeness of the molecule to a macroscopic ship trailing an anchor [113]. These structures are summarized in Figure 14.

Figure 14

Common scaffolds for oxepane-containing guanidinium alkaloids. Vessel units (61, 62 and 63); and typical anchor units (R2). Note that not all the structures are addressed here as R2 could contain other spermidine moieties or even being other functional...

All of them have been primarily isolated from marine sponges. The first member was discovered by Kashman’s group in 1989 from Hemimycale sp. of the Red Sea and the Caribbean Ptilocaulis spiculifer [114]. Since then, a plethora of new molecules have been reported, and new names were coined, such as monanchomycalins, crambescidin, neofolitispates, etc. All of them based on the marine species from which the compound is obtained [113,114,115,116,117,118,119,120].

Given that the guanidine motif is present in arginine aminoacid and guanine nucleobase, it is not surprising that this functional group appears in countless natural products, and it is even less surprising that it possesses outstanding beneficial properties. It has been demonstrated that this family show antiviral [122], fungicidal [123] and anticancer effects [124,125,126,127,128]. The mechanisms of action for this latter activity has been studied and now it is known that they are excellent Ca2+-channel blockers and good inhibitors of enzymes Na+, K+ or Ca2+-ATP-ase [129,130]. There are other applications; for instance, Crambescidin 800 has revealed exceptional protection of cell lines under oxidative stress, typically present in neuronal degenerative diseases [131].

Concerning the synthesis of the members in this family, fantastic efforts towards the development of chemical tools to prepare these intriguing structures have been addressed [121,132,133,134,135,136,137,138,139,140]. Since there are several in-depth works regarding the total synthesis of many compounds (or their fragments) in the family [141,142,143,144,145], addressing all of them would be out of the scope of this review. Therefore, we will cover herein, as an example, the preparation of the simple Crambescidin 359 which structure coincides with the main core “vessel unit”.

In 2002, Nagasawa and coworkers published the first total synthesis of this natural product [146]. They conceived a double 1,3-dipolar cycloaddition between a commercially available nitrone and two distinct terminal olefins which would have been previously prepared. Resulting pyrrolidine 66 would easily yield guanidine 65 and, finally, a double intramolecular condensation would furnish the desired compound (64), as shown in Scheme 8.

1,3-Dipolar cycloaddition of nitrone 67 with alkene 68 yielded isoxazolidine 69. Then, removal of the hydroxyl group, followed by treatment with mCPBA provided free nitrone 70. A second cycloaddition with olefin 71 furnished compound 72, which was readily transformed in pyrrolidine 73 by oxidation with mCPBA and subsequent reduction. Reaction with bis-N-Boc thiourea, followed by oxidation with TPAP/NMO system, deprotection with mild camphorsulfonic acid (CSA) and final N,O-acetalization gave 64 (Scheme 9).

One year later Murphy and coworkers reported an alternative synthetic approach to 64 [147]. The strategy relied on the preparation of a suitable bis-enone 78 ready to couple with a guanidine moiety to provide the pentacyclic unit of 64 in a one-step process (Scheme 10). Hence, a convergent synthesis of two different blocks (75 and 77) gave access to desired bis-enone 78 in good overall yield (14 steps). Condensation with guanidine followed by deprotection of two silyl groups (TBS and TPS) furnished Crambescidin 359 (64) bearing BF4 anion upon treatment with NaBF4.

On the course of synthetic studies towards guanidinium alkaloids, Overman’s group published a different stepwise method [148] that started with commercially available 3-butynol (79) whose chain was elongated with the incorporation of a guanidine group to get 80. Then, a set of 10 steps allowed the synthesis of guanidinium carboxylate 81. This compound was an extraordinary precursor for the preparation of other crambescidinds (and more members in guanidinium alkaloids family) and, due to that reason, it was extensively studied. Interestingly, it was found that, upon standing 81 in several buffers, decarboxylation mildly occurred yielding Crambescidin 359 (64). This approach is summarized in Scheme 11.

6.3. Oxepinamides Family

This large group has been isolated from a set of marine fungus species associated to very distinct organisms. They possess interesting beneficial properties; however, they are especially important due to their anti-cancer activity [149]. They all bear an oxepin fused to a pyrimidinone moiety, as the main structure, and a six- or seven-membered lactam. In the first case, the compounds are also known as diketopiperazines, which correspond to another vast family of species (marine or not), for which oxepane-derived molecules will be addressed later on.

The first example of this family, called Cinereanin, was isolated by Springer, Arison, Roberts and collaborators from Botrytis cinereal sunflower seeds in 1988 and showed to have plant growth regulating properties [150]. Its structure remained unknown for years until Christophersen’s group reported the isolation of three benzodiazepine alkaloids (called Circumdatins A, B and C) from a culture of the fungus Aspergillus ochraceus [151]. Although it is known that this is a common soil fungus, it has been demonstrated its adaptation to other niches, such as marine ecosystem. Interestingly, the initial zwitterionic proposed structures of two of them (A and B) were wrongly assigned according to recorded NMR data. In fact, no oxepane-like group was present. This misled the scientific community for nine years until Kusumi and coworkers could isolate a set of alkaloids from fungus Aspergillus ostianus and grow single-crystals of Circumdatins A and B suitable for X-ray analysis [152], which yielded the final corrected structure as shown in Figure 15. These compounds were also detected and confirmed by Alfonso, Botana and collaborators from original fungus Aspergillus ochraceus [153].

Figure 15

Circumdatins A and B. Original zwitterionic structure proposals by Christophersen (Left), and revised definitive structures by Kusumi (Right).

In parallel to Circumdatins discoveries, Belofsky, Köck’s group was able to isolate several bioactive metabolites from a fungus of the genus Acremonium, which were collected from the surface of Caribbean tunicate Ecteinascidia turbinata [154]. Three of them, generally called Oxepinamides A–C, contained oxepin derivatives with a structure very similar to the first one described by Springer, Arison, Roberts and collaborators, as depicted in Figure 16. It is worth noting that Oxepinamide A was capable of inhibiting ear edema induced in mice by using resiniferatoxin.

Figure 16

Chemical structures of Oxepinamides A–C isolated by Belofsky and Köck.

Later on, Sprogøe’s group reported two new compounds extracted from fungus Aspergillus janus [155]. One of them was called Janoxepin and had a very close structure to Cinereanin (Figure 17). It turned out to be active against the malaria parasite Plasmodium falciparum 3D7.

Figure 17

Comparison of Cinereanin (Left) and Janoxepin (Right) structures.

Janoxepin is the only compound of this family of oxepinamides from fungus species that has been synthesized. In 2012 Taylor’s group reported its total synthesis [156], according to the following retrosynthetic analysis: the key step is a ring closing metathesis (RCM) of a diallylated pyrimidinone 90, which should be easily prepared from guanidine 91 and dimethyl allylmalonate (Scheme 12).

Thus, amidine 91 was obtained in good yield in four consecutive steps (coupling with aminoacetonitrile, Boc deprotection, oxime formation-hydrogenation and final cyclization) starting from commercially available N-Boc-d-leucine. Further condensation with malonate 92 gave pyrimidone 94 along with unwanted total racemization (only 5% ee was detected). This molecule was turned into compound 90 by Mitsunobu reaction with allylic alcohol (Scheme 13).

Olefin metathesis was readily performed using second-generation Grubb’s catalyst, prior protection of 90 as imidate 95. Resulting compound 95 underwent the incorporation of the side chain through an aldol reaction with iso-butyraldehyde, followed by a chlorination and dehydrochlorination sequence furnishing dihydro-oxepin 96 (Scheme 14).

Formation of desired oxepin turned out to be extremely troublesome and, after many attempts, the only feasible procedure consisted of an allylic oxidation with SeO2 to give an alcohol 97 that was readily substituted by a chloride 98. Dehydrohalogenation was achieved but yields could never be optimized and only 10% of 98 was obtained. Nevertheless, (±)-Janoxepin (88) could be finally prepared after a simple deprotection step (Scheme 15).

Ahn, Oh and collaborators described, in 2011, four compounds from an ethyl acetate fraction of the marine-derived fungus Aspergillus sp. SF-5044 collected from Dadaepo Beach, Busan, Korea [157]. Two of them were oxepinamides, called Protuboxepins A and B, whose structure is shown in Figure 18. The reader should rapidly realize that these piperazines are structurally similar to Cinereanin and Janoxepin. Interestingly, both compounds contain the rare d-phenylalanine amino acid fragment. However, their anti-cancer activities towards several carcinoma cell lines were moderate. Nonetheless, Kihm and Ahn’s group reported the mechanism of tumor cell growth inhibition by Protuboxepin A [158]. They demonstrated that, due to an α,β-tubulin binding, microtubule dynamics were modified in such an extent that chromosomes were misaligned in metaphase, finally producing cell apoptosis.

Figure 18

Protuboxepins A and B from marine fungus Aspergillus sp. SF-5044.

In the last few years, up to six new rare oxepinamides have emerged from different fungus species [159,160,161,162]. They resemble structures already described here and are depicted in Figure 19. Apart from their structural interest, they have showed new bioactive abilities, such as antibacterial and antifungal properties.

Figure 19

Latest oxepinamides. (101) Varioxepin A. (102) and (103) oxepinamides from Aecilomyces variotii EN-291. (104) and (105) oxepinamides from Aspergillus versicolor SCSIO 05879. (106) oxepinamides from vent-crab associated Aspergillus versicolor XZ-4.

6.4. Diketopiperazine Sulfides

As commented above, diketopiperazine structures bearing oxepane-like moieties are present in other families. One interesting family corresponds to disulfide (trisulfide or tetrasulfide) derivatives. Due to the presence of such functional group, all these compounds exhibit outstanding biomedical applications (anticancer, antifungal, antiviral, etc.) [163,164,165,166,167,168,169,170,171].

The first members in this family were obtained from fungus Arachniotus aureus in 1968, and were named Aranotin and Apoaranotin. Along with their acetylated derivatives, they were considered metabolites from such species and very related to formerly known sulfur-containing diketopiperazines, e.g., Gliotoxin and Sporidesmin (Figure 20) [172,173,174,175,176]. Structural characteristics are a central diketopiperazine scaffold, a disulfur bridge and a functionalized oxepin-fused pyrrolidine. Their biosynthesis pathway has been recently unraveled by Wang and collaborators using genome-based deletion analysis [177]. These compounds are present in other classes of fungus, such as Aspergillus sp. KMD 901, and showed excellent apoptosis-inducing effects towards colon cancer cell lines [178].

Figure 20

First set of oxepin-containing diketopiperazine disulfides isolated from fungus Arachniotus aureus.

Another molecule of this family was obtained by Kawai’s group from Emericella striata, a thermotolerant fungus collected in Nepal [179,180,181]. It was called Emestrin and was reported as its acetylated form (Figure 21). Although not strictly marine, this compound belongs to the family due to its similarity to the previous structures and it is worth addressing. The previously described main scaffold is maintained but, in this case, diketopiperazine and oxepin moieties are additionally connected through a diphenyl ether chain giving rise to a macrocyclic lactone. Years later, the same group found structurally related molecules from Emericella foveolata [182].

Figure 21

Emestrin and its acetylated derivative isolated from Emericella striata.

The same researchers reported the isolation of a small group of diketopiperazines arising from Emericella heterothallica

0 thoughts on “Oxepine Synthesis Essay

Leave a Reply

Your email address will not be published. Required fields are marked *